Maintained by ppernot

checkRep.R script

This script collects the set of results files generated by analysis.R as specified in the taskTable and generates figures and statistics. The peak parameters are plotted as a function of dilu. If dilu contains the experiment index, checkRep.R can be used to assess the repeatability of an analysis.

Control variables

The job is defined by a few parameters.

taskTable  = 'files_quantification_2019July10.csv'
quantTable = 'targets_paper_quantification.csv'

fit_dim = 2
userTag = paste0('fit_dim_',fit_dim)

const_fwhm = 0.7
area_min   = 10

makePlots = TRUE



Figures summarizing the set of data for all pairs of species and a summary of the mean values and their uncertainty are generated.

Presently, the plots are generated in the Rstudio interface, but not saved to disk.

Checkrep plot for a repeatability analysis

Mean values and uncertainties for a repeatability analysis


The name of the file is a concatenation of the date, time, userTag, and ‘_compilation.csv’. It contains all the collected results, with the following additions:


[1] C. Rivier et al. (2014) Accredit. Qual. Assur. 19:269–274 doi

[2] Inverse variance weighting in Wikipedia